GEO DataSets

(Submitter supplied) In order to explore the regulatory information of the two different color associations in crucian carp, we identified the differential mRNAs of gold and greenish grey by transcriptome sequencing, and analyzed their functional and pathway enrichment.

Organism:

Carassius auratus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32622

6 Samples

Download data: TXT

(Submitter supplied) In order to explore the regulatory information of the two different color associations in crucian carp, we identified the differential miRNAs of gold and greenish grey by smallRNA sequencing, and analyzed their functional and pathway enrichment.

Organism:

Carassius auratus

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL32622

6 Samples

Download data: TXT

(Submitter supplied) the current study paints a thorough transcriptome profiles of different skin color groups (white, yellow and brown) in celestial goldfish, and several candidate genes were selected as important functional genes involved in the color variation

Organism:

Carassius auratus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32915

9 Samples

Download data: TXT

(Submitter supplied) Hypoxia has become one of the most critical factors limiting the development of aquaculture. Crucian carp (Carassius auratus) is widely consumed fish in China, with excellent tolerance to hypoxic environment. However, the molecular mechanisms underlying hypoxia adaptation and tolerance in crucian carp remain unclear. In this study, we detected the changes of biochemical parameters after hypoxia stress (3 h (H3h), H12h, and H24h) and reoxygenation (reoxygenation for 3 h after hypoxia 24 h (R3h)), mRNA and miRNA expression profiles under H12h compared to the control, and key hypoxia-related genes expression patterns in the liver of crucian carp through biochemical methods, RNA-seq, and qRT-PCR. more...

Organism:

Carassius auratus

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL32622

6 Samples

Download data: TXT

(Submitter supplied) Hypoxia has become one of the most critical factors limiting the development of aquaculture. Crucian carp (Carassius auratus) is widely consumed fish in China, with excellent tolerance to hypoxic environment. However, the molecular mechanisms underlying hypoxia adaptation and tolerance in crucian carp remain unclear. In this study, we detected the changes of biochemical parameters after hypoxia stress (3 h (H3h), H12h, and H24h) and reoxygenation (reoxygenation for 3 h after hypoxia 24 h (R3h)), mRNA and miRNA expression profiles under H12h compared to the control, and key hypoxia-related genes expression patterns in the liver of crucian carp through biochemical methods, RNA-seq, and qRT-PCR. more...

Organism:

Carassius auratus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32622

6 Samples

Download data: TXT

(Submitter supplied) Radial glial cells (RGCs) are the most abundant macroglia in the teleost brain and have established roles in neurogenesis and neurosteroidogenesis; however, their transcriptome remains unstudied, limiting functional understanding of this crucial cell type. Using cultured goldfish RGCs, RNA sequencing and de novo transcriptome assembly were performed, generating the first reference transcriptome for fish RGCs with 17,620 unique genes identified. more...

Organism:

Carassius auratus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24174

10 Samples

Download data: FASTA, XLSX